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| Draft | Selección # | Jugador | Pos. | Universidad |
|---|---|---|---|---|
| 2024 | 31 | Ricky Pearsall | WR | Florida |
| 2023 | No tuvo Pick | |||
| 2022 | No tuvo Pick | |||
| 2021 | 3 | Trey Lance | QB | North Dakota State |
| 2020 | 14 | Javon Kinlaw | DT | South Carolina |
| 2020 | 25 | Brandon Aiyuk | WR | Arizona State |
| 2019 | 2 | Nick Bosa | DE | Ohio State |
| 2018 | 9 | Mike McGlinchey | T | Notre Dame |
| 2017 | 3 | Solomon Thomas | DE | Stanford |
| 2017 | 31 | Reuben Foster | LB | Alabama |
| 2016 | 7 | DeForest Buckner | DE | Oregon |
| 2016 | 28 | Joshua Garnett | G | Stanford |
| 2015 | 17 | Arik Armstead | DE | Oregon |
| 2014 | 30 | Jimmie Ward | SS | Northern Illinois |
| 2013 | 18 | Eric Reid | FS | LSU |
| 2012 | 30 | A.J. Jenkins | WR | Illinois |
| 2011 | 7 | Aldon Smith | LB | Missouri |
| 2010 | 11 | Anthony Davis | T | Rutgers |
| 2010 | 17 | Mike Iupati | G | Idaho |
| 2009 | 10 | Michael Crabtree | WR | Texas Tech |
| 2008 | 29 | Kentwan Balmer | DE | North Carolina |
| 2007 | 11 | Patrick Willis | ILB | Mississippi |
| 2007 | 28 | Joe Staley | OT | Central Michigan |
| 2006 | 6 | Vernon Davis | TE | Maryland |
| 2006 | 22 | Manny Lawson | OLB | North Carolina State |
| 2005 | 1 | Alex Smith | QB | Utah |
| 2004 | 31 | Rashaun Woods | WR | Oklahoma State |
| 2003 | 26 | Kwame Harris | T | Stanford |
| 2002 | 27 | Mike Rumph | DB | Miami (Fla.) |
| 2001 | 7 | Andre Carter | DE | California |
| 2000 | 16 | Julian Peterson | OLB | Michigan State |
| 2000 | 24 | Ahmed Plummer | CB | Ohio State |
| 1999 | 24 | Reggie McGrew | DT | Florida |
| 1998 | 28 | R.W. McQuarters | CB | Oklahoma State |
| 1997 | 26 | Jim Druckenmiller | QB | Virginia Tech |
| 1996 | No tuvo Pick | |||
| 1995 | 10 | J.J. Stokes | WR | UCLA |
| 1994 | 7 | Bryant Young | DT | Notre Dame |
| 1994 | 28 | William Floyd | FB | Florida State |
| 1993 | 26 | Dana Stubblefield | DT | Kansas |
| 1993 | 27 | Todd Kelly | OLB | Tennessee |
| 1992 | 18 | Dana Hall | FS | Washington |
| 1991 | 25 | Ted Washington | NT | Louisville |
| 1990 | 25 | Dexter Carter | RB | Florida State |
| 1989 | 28 | Keith DeLong | LB | Tennessee |
| 1988 | No tuvo Pick | |||
| 1987 | 22 | Harris Barton | G | North Carolina |
| 1987 | 25 | Terrence Flagler | RB | Clemson |
| 1986 | No tuvo Pick | |||
| 1985 | 16 | Jerry Rice | WR | Mississippi Valley State |
| 1984 | 24 | Todd Shell | LB | Brigham Young |
| 1983 | No Pick | |||
| 1982 | No tuvo Pick | |||
| 1981 | 8 | Ronnie Lott | DB | USC |
| 1980 | 13 | Earl Cooper | RB | Rice |
| 1980 | 20 | Jim Stuckey | DE | Clemson |
| 1979 | No tuvo Pick | |||
| 1978 | 7 | Ken MacAfee | TE | Notre Dame |
| 1978 | 24 | Dan Bunz | LB | Long Beach State |
| 1977 | No tuvo Pick | |||
| 1976 | No tuvo Pick | |||
| 1975 | 10 | Jimmy Webb | DT | Mississippi State |
| 1974 | 9 | Wilbur Jackson | RB | Alabama |
| 1974 | 10 | Bill Sandifer | DT | UCLA |
| 1973 | 18 | Mike Holmes | DB | Texas Southern |
| 1972 | 19 | Terry Beasley | WR | Auburn |
| 1971 | 23 | Tim Anderson | DB | Ohio State |
| 1970 | 9 | Cedrick Hardman | DE | North Texas |
| 1970 | 17 | Bruce Taylor | DB | Boston U. |
| 1969 | 7 | Ted Kwalick | TE | Penn State |
| 1969 | 16 | Gene Washington | WR | Stanford |
| 1968 | 15 | Forrest Blue | C | Auburn |
| 1967 | 3 | Steve Spurrier | QB | Florida |
| 1967 | 11 | Cas Banaszek | T | Northwestern |
| 1966 | Stan Hindman | DE | Mississippi | |
| 1965 | George Donnelly | DB | Illinois | |
| 1965 | Ken Willard | RB | North Carolina | |
| 1964 | 1 | Dave Parks | WR | Texas Tech |
| 1963 | Kermit Alexander | DB | UCLA | |
| 1962 | No tuvo Pick | |||
| 1961 | Jim Johnson | DB | UCLA | |
| 1961 | Bernie Casey | WR | Bowling Green State | |
| 1961 | Billy Kilmer | QB | UCLA | |
| 1960 | Monty Stickles | TE | Notre Dame | |
| 1959 | Dave Baker | DB | Oklahoma | |
| 1959 | Dan James | T | Ohio State | |
| 1958 | Charlie Krueger | DT | Texas A&M | |
| 1958 | James Pace | HB | Michigan | |
| 1957 | John Brodie | QB | Stanford | |
| 1956 | Earl Morrall | QB | Michigan State | |
| 1955 | Dicky Moegle | DB | Rice | |
| 1954 | No tuvo Pick | |||
| 1953 | 1 | Harry Babcock | OE | Georgia |
| 1953 | Tom Stolhandske | LB | Texas | |
| 1952 | Hugh McElhenny | HB | Washington | |
| 1951 | No tuvo Pick | |||
| 1950 | 11 | Leo Nomellini | DT | Minnesota |